The law
LLP Act 2008, Sec 23(1), 23(2) and 23(4)
Partners' rights are governed by the LLP agreement; the agreement and changes are filed with the Registrar; where silent, the First Schedule appliesSource
LLP Rules 2009, Rule 21
LLP agreement information filed in Form 3 within 30 days of incorporation; changes within 30 days of the change, with Annexure A feeSource
LLP Act 2008, Sec 69 (as substituted from 1 April 2022)
Late documents can be filed with the prescribed additional fee, without prejudice to other liabilitySource
LLP (Amendment) Rules 2022, G.S.R. 109(E), Annexure A (effective 1 April 2022)
Filing fee by contribution and delay multiples, with lower multiples for small LLPsSource
Government fee
Form 3 filing fee by total contribution under LLP (Amendment) Rules 2022: up to ₹1,00,000: ₹50; ₹1 lakh to ₹5 lakh: ₹100; ₹5 lakh to ₹10 lakh: ₹150; ₹10 lakh to ₹25 lakh: ₹200; ₹25 lakh to ₹1 crore: ₹400; above ₹1 crore: ₹600 (https://taxguru.in/corporate-law/analysis-limited-liability-partnership-amendment-rules-2022.html). If contribution moves to a higher slab, the registration-fee difference is also paid through Form 3. State stamp duty on the agreement is separate and depends on state law (https://www.legalwiz.in/blog/llp-form-3-filing-guide-to-file-the-llp-agreement).
Late fee or penalty
Additional fee as a multiple of the normal fee from 1 April 2022. Small LLP / other LLP: up to 15 days 1 time / 1 time; 15 to 30 days 2 / 4; 30 to 60 days 4 / 8; 60 to 90 days 6 / 12; 90 to 180 days 10 / 20; 180 to 360 days 15 / 30; beyond 360 days 25 / 50 times. The old ₹100 per day fee no longer applies (https://cleartax.in/s/limited-liability-partnership-amendment-rules-2022, https://taxguru.in/corporate-law/analysis-limited-liability-partnership-amendment-rules-2022.html).